PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11333_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 1003aa    MW: 112132 Da    PI: 9.3355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11333_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07234256326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     t lC++fa+ G C++G+ C+F+H 
  Neem_11333_f_1 234 TQLCKDFAA-GRCRRGSHCHFSHH 256
                     78*******.*************5 PP

2zf-CCCH19.22.2e-06313333526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ffa+ G C+ G  C+F+H+
  Neem_11333_f_1 313 PCKFFAA-GNCRNGKYCRFSHS 333
                     8**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-4231257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084231258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-5233256IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4234256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5234256IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4308334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023308335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5311333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MSGGRRKRNS KWDLKEDSQL SHEKVRDSAW PGKAVMSCHD KESRSGRFSP KVAGHNNVHK  60
WSGREADDII SSKHDLQSSY REPLLGSRGS RRDDSIDDYR ENFKAISTWD GDEGYNMRMS  120
PGVDDWRNQT RRRSPKNDWN RHHRSSIMNN VVYEIQYANW YMLVAPCDEL KQISSFIFLS  180
LNAICRSRSR SRSRSRSRSR SRSRSWNRSR SPVRGFRRES DVYGRSRGRA GVSTQLCKDF  240
AAGRCRRGSH CHFSHHSTHG YEDSWESRHR ESGAPKYSTP HESREYPIRS GRNREGSLER  300
RGEHEFRKSG DIPCKFFAAG NCRNGKYCRF SHSGQALVSP NRRSREDNSV RGHNSDDVDK  360
LWNGPKWNDA NTFSDAAKSS DEKYERMVAN RKSQDDRLVR NHNSDNVEKL WDGQPWGGTD  420
TFLDAAKLSE NQNDRMGAPG PRFTAWSRDD RLPHSLEDTA AHANQTVVGH EESEGNKMDT  480
LQSKIKSAQH MLTRQWLAMK KSKIKSAGVG MGASESGGRE NWLGDMEMSP DWNFTVKSSN  540
CAMNEDHGHI PRSSHSLPIS DTSVLCEQGI AREASVVLND PVTTIQPVIL DKSYLKQDIN  600
QRDSGGVALP RDKNGVGKTA LSPIDLNFSS NILPTQSYDR NVQSSSALPF STLNSIGQSQ  660
GAIPSEPSRV GNINNPQNNT ALQMEKLSNK PGIGDGNASQ FSSAIPTTQN MVSGEQLTQL  720
TNLSASLVQF LGNGQQLPQL YAALNSHNVM QVPSSANSEG PTAPDSAMSN QPNEVIISLK  780
QYDPLCDSVE LKKHDAVNTP GTLINPAGQK SHVDGKPNGG SGKTTDSSQL PKQLESDANR  840
KVSELSIGLA AEEDKKAQVE NKIPEENGKV QKTDEDDNDD KDDKAEKSKD KGIRAFKFAL  900
AEFVKELLKP TWKEGQINKD AYKNIVKKVV DKVIGTMQGA ANIPQTQEKI DQYLSFSKSK  960
LTKFVQLILL RVSLNLQAHI SCIVICVWME RVATDMIPEL AWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193203RSRSRSRSRSR
2195203RSRSRSRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464624.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_006464625.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A067EWT60.0A0A067EWT6_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-09C3H family protein